IL_9TZ5_071

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_071 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.256

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TZ5|1|a|U|1865
9TZ5|1|a|U|1866
9TZ5|1|a|A|1867
9TZ5|1|a|A|1868
9TZ5|1|a|G|1869
*
9TZ5|1|a|C|1903
9TZ5|1|a|G|1904
9TZ5|1|a|A|1905
9TZ5|1|a|A|1906
9TZ5|1|a|G|1907

Current chains

Chain a

23S ribosomal RNA

Nearby chains