IL_9TZ5_072

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUGAUG*UUGAUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_072 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.333

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9TZ5|1|a|G|1869
9TZ5|1|a|U|1870
9TZ5|1|a|G|1871
9TZ5|1|a|A|1872
9TZ5|1|a|U|1873
9TZ5|1|a|G|1874
*
9TZ5|1|a|U|1898
9TZ5|1|a|U|1899
9TZ5|1|a|G|1900
9TZ5|1|a|A|1901
9TZ5|1|a|U|1902
9TZ5|1|a|C|1903

Current chains

Chain a

23S ribosomal RNA

Nearby chains