IL_9TZ5_073

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_073 not in the Motif Atlas

Geometric match to IL_8B0X_136

Geometric discrepancy: 0.0661

The information below is about IL_8B0X_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9TZ5|1|a|U|1878
9TZ5|1|a|U|1879
9TZ5|1|a|A|1880
9TZ5|1|a|G|1881
*
9TZ5|1|a|C|1890
9TZ5|1|a|G|1891
9TZ5|1|a|A|1892
9TZ5|1|a|A|1893
9TZ5|1|a|G|1894

Current chains

Chain a

23S ribosomal RNA

Nearby chains