IL_9TZ5_080

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

9TZ5|1|a|G|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_080 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1959

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9TZ5|1|a|C|2097
9TZ5|1|a|A|2098
9TZ5|1|a|G|2099
*
9TZ5|1|a|U|2252
9TZ5|1|a|G|2253
9TZ5|1|a|G|2254
9TZ5|1|a|G|2255

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL28

Chain o

Large ribosomal subunit protein uL2