IL_9TZ5_098

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9TZ5|1|a|G|2592, 9TZ5|1|a|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_098 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1239

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9TZ5|1|a|C|2526
9TZ5|1|a|U|2527
9TZ5|1|a|C|2528
*
9TZ5|1|a|G|2590
9TZ5|1|a|U|2591
9TZ5|1|a|G|2592
9TZ5|1|a|A|2593
9TZ5|1|a|G|2594

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain v

Large ribosomal subunit protein bL32

Chain x

Large ribosomal subunit protein uL14