IL_9TZ5_101

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GAA*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_101 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2192

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9TZ5|1|a|G|2604
9TZ5|1|a|A|2605
9TZ5|1|a|A|2606
*
9TZ5|1|a|U|2620
9TZ5|1|a|PSU|2621
9TZ5|1|a|C|2622

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2