IL_9TZ9_025
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TZ9_025 not in the Motif Atlas
- Geometric match to IL_8B0X_090
- Geometric discrepancy: 0.0671
- The information below is about IL_8B0X_090
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9TZ9|1|a|G|862
9TZ9|1|a|G|863
9TZ9|1|a|G|864
9TZ9|1|a|G|865
9TZ9|1|a|U|866
9TZ9|1|a|A|867
9TZ9|1|a|G|868
*
9TZ9|1|a|C|921
9TZ9|1|a|G|922
9TZ9|1|a|A|923
9TZ9|1|a|A|924
9TZ9|1|a|U|925
9TZ9|1|a|A|926
9TZ9|1|a|C|927
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL27
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain s
- Large ribosomal subunit protein uL16
- Chain t
- Large ribosomal subunit protein uL30
Coloring options: