IL_9TZ9_034

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

9TZ9|1|a|C|1148, 9TZ9|1|a|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_034 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.584

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9TZ9|1|a|U|1024
9TZ9|1|a|U|1025
9TZ9|1|a|A|1026
9TZ9|1|a|A|1027
9TZ9|1|a|G|1028
9TZ9|1|a|U|1029
9TZ9|1|a|G|1030
*
9TZ9|1|a|C|1146
9TZ9|1|a|U|1147
9TZ9|1|a|C|1148
9TZ9|1|a|A|1149
9TZ9|1|a|A|1150
9TZ9|1|a|A|1151

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13