IL_9TZ9_048

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GAAG*CACGC

Length

9 nucleotides

Bulged bases

9TZ9|1|a|C|1574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_048 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.1696

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9TZ9|1|a|G|1442
9TZ9|1|a|A|1443
9TZ9|1|a|A|1444
9TZ9|1|a|G|1445
*
9TZ9|1|a|C|1572
9TZ9|1|a|A|1573
9TZ9|1|a|C|1574
9TZ9|1|a|G|1575
9TZ9|1|a|C|1576

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2