IL_9TZ9_069

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9TZ9|1|a|A|1915, 9TZ9|1|a|A|1916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_069 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.1672

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9TZ9|1|a|U|1855
9TZ9|1|a|G|1856
*
9TZ9|1|a|U|1914
9TZ9|1|a|A|1915
9TZ9|1|a|A|1916
9TZ9|1|a|A|1917

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2