IL_9TZ9_084

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGAG*CAACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ9_084 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3191

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9TZ9|1|a|G|2140
9TZ9|1|a|G|2141
9TZ9|1|a|A|2142
9TZ9|1|a|G|2143
*
9TZ9|1|a|C|2177
9TZ9|1|a|A|2178
9TZ9|1|a|A|2179
9TZ9|1|a|C|2180
9TZ9|1|a|C|2181
9TZ9|1|a|U|2182
9TZ9|1|a|U|2183
9TZ9|1|a|G|2184
9TZ9|1|a|A|2185
9TZ9|1|a|A|2186
9TZ9|1|a|A|2187
9TZ9|1|a|U|2188
9TZ9|1|a|A|2189
9TZ9|1|a|C|2190

Current chains

Chain a

23S ribosomal RNA

Nearby chains