IL_9TZE_014

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9TZE|1|A|U|241, 9TZE|1|A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_014 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1688

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9TZE|1|A|G|239
9TZE|1|A|A|240
9TZE|1|A|U|241
9TZE|1|A|U|242
9TZE|1|A|A|243
9TZE|1|A|G|244
*
9TZE|1|A|C|274
9TZE|1|A|G|275
9TZE|1|A|A|276
9TZE|1|A|C|277
9TZE|1|A|G|278
9TZE|1|A|A|279
9TZE|1|A|U|280
9TZE|1|A|C|281

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17