IL_9TZE_020

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.0974

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9TZE|1|A|U|406
9TZE|1|A|G|407
9TZE|1|A|A|408
9TZE|1|A|A|409
9TZE|1|A|G|410
9TZE|1|A|A|411
9TZE|1|A|A|412
9TZE|1|A|G|413
*
9TZE|1|A|U|424
9TZE|1|A|G|425
9TZE|1|A|U|426
9TZE|1|A|A|427
9TZE|1|A|A|428
9TZE|1|A|A|429
9TZE|1|A|G|430

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4