IL_9TZE_098

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_098 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.2047

The information below is about IL_7A0S_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

9TZE|1|a|U|876
9TZE|1|a|U|877
9TZE|1|a|U|878
*
9TZE|1|a|A|911
9TZE|1|a|G|912
9TZE|1|a|G|913

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

Large ribosomal subunit protein uL16

Chain u

Large ribosomal subunit protein bL25