IL_9TZE_130

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_130 not in the Motif Atlas

Geometric match to IL_8B0X_180

Geometric discrepancy: 0.0377

The information below is about IL_8B0X_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

9TZE|1|a|G|1681
9TZE|1|a|G|1682
9TZE|1|a|A|1683
9TZE|1|a|A|1684
9TZE|1|a|C|1685
9TZE|1|a|U|1686
9TZE|1|a|A|1687
9TZE|1|a|G|1688
9TZE|1|a|G|1689
*
9TZE|1|a|C|2006
9TZE|1|a|U|2007
9TZE|1|a|G|2008
9TZE|1|a|U|2009
9TZE|1|a|C|2010

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain x

Large ribosomal subunit protein uL14