IL_9TZE_137

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9TZE|1|a|A|1815, 9TZE|1|a|C|1830, 9TZE|1|a|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_137 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1066

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9TZE|1|a|U|1812
9TZE|1|a|G|1813
9TZE|1|a|C|1814
9TZE|1|a|A|1815
9TZE|1|a|A|1816
9TZE|1|a|A|1817
9TZE|1|a|C|1818
*
9TZE|1|a|G|1827
9TZE|1|a|G|1828
9TZE|1|a|A|1829
9TZE|1|a|C|1830
9TZE|1|a|G|1831
9TZE|1|a|U|1832
9TZE|1|a|A|1833
9TZE|1|a|U|1834
9TZE|1|a|A|1835

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain o

Large ribosomal subunit protein uL2