IL_9TZE_153

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_153 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4121

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

9TZE|1|a|G|2126
9TZE|1|a|U|2127
9TZE|1|a|G|2128
9TZE|1|a|U|2129
9TZE|1|a|A|2130
9TZE|1|a|G|2131
9TZE|1|a|G|2132
9TZE|1|a|A|2133
9TZE|1|a|U|2134
9TZE|1|a|A|2135
9TZE|1|a|G|2136
*
9TZE|1|a|C|2194
9TZE|1|a|C|2195

Current chains

Chain a

23S ribosomal RNA

Nearby chains