IL_9TZE_154

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAG*CAACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZE_154 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3193

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9TZE|1|a|G|2140
9TZE|1|a|G|2141
9TZE|1|a|A|2142
9TZE|1|a|G|2143
*
9TZE|1|a|C|2177
9TZE|1|a|A|2178
9TZE|1|a|A|2179
9TZE|1|a|C|2180
9TZE|1|a|C|2181
9TZE|1|a|U|2182
9TZE|1|a|U|2183
9TZE|1|a|G|2184
9TZE|1|a|A|2185
9TZE|1|a|A|2186
9TZE|1|a|A|2187
9TZE|1|a|U|2188
9TZE|1|a|A|2189
9TZE|1|a|C|2190

Current chains

Chain a

23S ribosomal RNA

Nearby chains