IL_9UJU_002

3D structure

PDB id

9UJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of Egalitarian in complex with the K10 mRNA localization signal reveals a modular binding surface required for function

Experimental method

X-RAY DIFFRACTION

Resolution

3.08 Å

Loop

Sequence

AU*ACU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UJU_002 not in the Motif Atlas

Geometric match to IL_1U9S_008

Geometric discrepancy: 0.3031

The information below is about IL_1U9S_008

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9UJU|1|B|A|12
9UJU|1|B|U|13
*
9UJU|1|B|A|34
9UJU|1|B|C|35
9UJU|1|B|U|36

Current chains

Chain B

RNA (46-MER)

Nearby chains

Chain A

Egalitarian, isoform B