IL_9UWH_050

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

9UWH|1|A|G|3063, 9UWH|1|A|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_050 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1666

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

9UWH|1|A|A|2997
9UWH|1|A|U|2998
9UWH|1|A|C|2999
*
9UWH|1|A|G|3061
9UWH|1|A|U|3062
9UWH|1|A|G|3063
9UWH|1|A|A|3064
9UWH|1|A|U|3065

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32m

Chain E

Large ribosomal subunit protein uL3m