IL_9UWH_058

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

9UWH|1|AA|U|650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_058 not in the Motif Atlas

Geometric match to IL_1S03_005

Geometric discrepancy: 0.3952

The information below is about IL_1S03_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

9UWH|1|AA|A|649
9UWH|1|AA|U|650
9UWH|1|AA|A|651
*
9UWH|1|AA|U|667
9UWH|1|AA|U|668

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS5m

Chain AO

Small ribosomal subunit protein mS40