IL_9UWH_066

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_066 not in the Motif Atlas

Geometric match to IL_3DIL_004

Geometric discrepancy: 0.2188

The information below is about IL_3DIL_004

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

9UWH|1|AA|G|762
9UWH|1|AA|C|763
9UWH|1|AA|A|764
9UWH|1|AA|C|765
*
9UWH|1|AA|G|777
9UWH|1|AA|C|778

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain A3

Small ribosomal subunit protein mS38

Chain AL

Small ribosomal subunit protein uS15m

Chain AN

Small ribosomal subunit protein uS17m