IL_9UWH_092

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

9UWH|1|AA|C|1330, 9UWH|1|AA|A|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_092 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.2636

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9UWH|1|AA|C|1262
9UWH|1|AA|G|1263
*
9UWH|1|AA|U|1329
9UWH|1|AA|C|1330
9UWH|1|AA|A|1331
9UWH|1|AA|A|1332
9UWH|1|AA|G|1333

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS3m

Chain AD

Small ribosomal subunit protein uS5m

Chain AH

Small ribosomal subunit protein uS10m

Chain AK

Small ribosomal subunit protein uS14m