IL_9UWH_099

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(B8T)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UWH_099 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1451

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9UWH|1|AA|G|1485
9UWH|1|AA|B8T|1486
9UWH|1|AA|C|1487
9UWH|1|AA|5MC|1488
*
9UWH|1|AA|G|1562
9UWH|1|AA|U|1563
9UWH|1|AA|A|1564
9UWH|1|AA|A|1565
9UWH|1|AA|C|1566

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Small ribosomal subunit protein mS38

Chain AJ

Small ribosomal subunit protein uS12m

Chain Ax

P/P-tRNA

Chain Az

mRNA