IL_9UZK_013

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZK_013 not in the Motif Atlas

Geometric match to IL_9H3G_004

Geometric discrepancy: 0.2319

The information below is about IL_9H3G_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9UZK|1|2|C|187
9UZK|1|2|U|188
9UZK|1|2|G|189
9UZK|1|2|A|190
9UZK|1|2|C|191
*
9UZK|1|2|G|204
9UZK|1|2|G|205
9UZK|1|2|A|206
9UZK|1|2|U|207
9UZK|1|2|G|208

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS8