IL_9UZK_023

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

9UZK|1|2|U|478

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZK_023 not in the Motif Atlas

Homologous match to IL_9PN5_164

Geometric discrepancy: 0.1307

The information below is about IL_9PN5_164

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9UZK|1|2|U|477
9UZK|1|2|U|478
9UZK|1|2|A|479
*
9UZK|1|2|U|501
9UZK|1|2|A|502

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain a

40S ribosomal protein S24