IL_9UZK_027

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAG*CCUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZK_027 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.2736

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9UZK|1|2|C|522
9UZK|1|2|A|523
9UZK|1|2|G|524
*
9UZK|1|2|C|539
9UZK|1|2|C|540
9UZK|1|2|U|541
9UZK|1|2|G|542

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain i

Small ribosomal subunit protein eS30