IL_9UZK_029

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

9UZK|1|2|G|578, 9UZK|1|2|G|579, 9UZK|1|2|A|580, 9UZK|1|2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|G|553
9UZK|1|2|A|554
9UZK|1|2|G|555
*
9UZK|1|2|C|575
9UZK|1|2|G|576
9UZK|1|2|A|577
9UZK|1|2|G|578
9UZK|1|2|G|579
9UZK|1|2|A|580
9UZK|1|2|U|581
9UZK|1|2|C|582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain i

Small ribosomal subunit protein eS30