IL_9UZK_036

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUAGU*AUCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|C|666
9UZK|1|2|G|667
9UZK|1|2|U|668
9UZK|1|2|A|669
9UZK|1|2|G|670
9UZK|1|2|U|671
*
9UZK|1|2|A|1020
9UZK|1|2|U|1021
9UZK|1|2|C|1022
9UZK|1|2|A|1023
9UZK|1|2|A|1024
9UZK|1|2|G|1025

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS17

Chain P

Small ribosomal subunit protein uS15

Chain Y

Small ribosomal subunit protein uS8

Chain Z

Small ribosomal subunit protein uS12