IL_9UZK_040

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|G|803
9UZK|1|2|A|804
9UZK|1|2|A|805
9UZK|1|2|A|806
9UZK|1|2|A|807
9UZK|1|2|A|808
9UZK|1|2|A|809
9UZK|1|2|U|810
9UZK|1|2|U|811
9UZK|1|2|A|812
*
9UZK|1|2|U|844
9UZK|1|2|A|845
9UZK|1|2|C|846
9UZK|1|2|C|847
9UZK|1|2|G|848
9UZK|1|2|C|849
9UZK|1|2|A|850
9UZK|1|2|G|851
9UZK|1|2|C|852

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain L

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS17

Chain Y

Small ribosomal subunit protein uS8