IL_9UZK_063

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9UZK|1|2|G|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|G|1277
9UZK|1|2|A|1278
9UZK|1|2|C|1279
9UZK|1|2|A|1280
9UZK|1|2|G|1281
9UZK|1|2|G|1282
9UZK|1|2|A|1283
9UZK|1|2|U|1284
9UZK|1|2|U|1285
9UZK|1|2|G|1286
*
9UZK|1|2|C|1305
9UZK|1|2|U|1306
9UZK|1|2|C|1307
9UZK|1|2|G|1308
9UZK|1|2|A|1309
9UZK|1|2|U|1310
9UZK|1|2|U|1311
9UZK|1|2|C|1312

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein eS10

Chain O

Small ribosomal subunit protein eS12

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein