IL_9UZK_081

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|G|1599
9UZK|1|2|G|1600
9UZK|1|2|G|1601
9UZK|1|2|A|1602
9UZK|1|2|U|1603
9UZK|1|2|C|1604
9UZK|1|2|G|1605
*
9UZK|1|2|C|1624
9UZK|1|2|A|1625
9UZK|1|2|U|1626
9UZK|1|2|G|1627
9UZK|1|2|A|1628
9UZK|1|2|A|1629
9UZK|1|2|C|1630

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

Small ribosomal subunit protein uS13

Chain V

Small ribosomal subunit protein eS19

Chain h

Small ribosomal subunit protein eS25