IL_9UZK_089

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZK_089 not in the Motif Atlas

Homologous match to IL_9PN5_227

Geometric discrepancy: 0.2946

The information below is about IL_9PN5_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55553.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9UZK|1|2|U|1724
9UZK|1|2|U|1725
9UZK|1|2|A|1726
*
9UZK|1|2|U|1797
9UZK|1|2|U|1798
9UZK|1|2|G|1799

Current chains

Chain 2

18S ribosomal RNA

Nearby chains