IL_9UZK_096

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCGGAACCCCCC*GCCUC

Length

17 nucleotides

Bulged bases

9UZK|1|z|C|536, 9UZK|1|z|C|537

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|z|G|530
9UZK|1|z|C|531
9UZK|1|z|G|532
9UZK|1|z|G|533
9UZK|1|z|A|534
9UZK|1|z|A|535
9UZK|1|z|C|536
9UZK|1|z|C|537
9UZK|1|z|C|538
9UZK|1|z|C|539
9UZK|1|z|C|540
9UZK|1|z|C|541
*
9UZK|1|z|G|556
9UZK|1|z|C|557
9UZK|1|z|C|558
9UZK|1|z|U|559
9UZK|1|z|C|560

Current chains

Chain z

EMCV IRES

Nearby chains

Chain U

Small ribosomal subunit protein uS13

Chain y

Transfer RNA; tRNA