IL_9UZL_004
3D structure
- PDB id
- 9UZL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.01 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 9UZL|1|2|U|44, 9UZL|1|2|A|46
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9UZL_004 not in the Motif Atlas
- Homologous match to IL_9PN5_145
- Geometric discrepancy: 0.2108
- The information below is about IL_9PN5_145
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88082.4
- Basepair signature
- cWW-L-tSS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9UZL|1|2|G|41
9UZL|1|2|A|42
9UZL|1|2|U|43
9UZL|1|2|U|44
9UZL|1|2|A|45
9UZL|1|2|A|46
9UZL|1|2|G|47
*
9UZL|1|2|C|469
9UZL|1|2|G|470
9UZL|1|2|C|471
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain Z
- Small ribosomal subunit protein uS12
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