IL_9UZL_006

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

UCUAAG*CUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_006 not in the Motif Atlas

Homologous match to IL_9PN5_147

Geometric discrepancy: 0.159

The information below is about IL_9PN5_147

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61299.8

Basepair signature

cWW-cWH-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

9UZL|1|2|U|57
9UZL|1|2|C|58
9UZL|1|2|U|59
9UZL|1|2|A|60
9UZL|1|2|A|61
9UZL|1|2|G|62
*
9UZL|1|2|C|86
9UZL|1|2|U|87
9UZL|1|2|G|88

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain I

Small ribosomal subunit protein eS6

Chain a

40S ribosomal protein S24