IL_9UZL_030

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_030 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.206

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9UZL|1|2|U|556
9UZL|1|2|C|557
9UZL|1|2|C|558
9UZL|1|2|A|559
*
9UZL|1|2|U|571
9UZL|1|2|U|572
9UZL|1|2|A|573
9UZL|1|2|A|574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain a

40S ribosomal protein S24