IL_9UZL_040

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|G|803
9UZL|1|2|A|804
9UZL|1|2|A|805
9UZL|1|2|A|806
9UZL|1|2|A|807
9UZL|1|2|A|808
9UZL|1|2|A|809
9UZL|1|2|U|810
9UZL|1|2|U|811
9UZL|1|2|A|812
*
9UZL|1|2|U|844
9UZL|1|2|A|845
9UZL|1|2|C|846
9UZL|1|2|C|847
9UZL|1|2|G|848
9UZL|1|2|C|849
9UZL|1|2|A|850
9UZL|1|2|G|851
9UZL|1|2|C|852

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain L

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS17

Chain Y

Small ribosomal subunit protein uS8