IL_9UZL_046

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9UZL|1|2|G|929

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_046 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.2306

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9UZL|1|2|C|927
9UZL|1|2|G|928
9UZL|1|2|G|929
9UZL|1|2|G|930
9UZL|1|2|G|931
*
9UZL|1|2|C|1003
9UZL|1|2|A|1004
9UZL|1|2|A|1005
9UZL|1|2|G|1006

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein eS1

Chain P

Small ribosomal subunit protein uS15

Chain b

Small ribosomal subunit protein eS26