IL_9UZL_058

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9UZL|1|2|C|1211, 9UZL|1|2|C|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|A|1210
9UZL|1|2|C|1211
9UZL|1|2|C|1212
9UZL|1|2|A|1213
*
9UZL|1|2|U|1676
9UZL|1|2|C|1677
9UZL|1|2|C|1678
9UZL|1|2|C|1679
9UZL|1|2|U|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS9

Chain b

Small ribosomal subunit protein eS26

Chain d

Small ribosomal subunit protein eS28

Chain y

Transfer RNA; tRNA