IL_9UZL_071

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZL_071 not in the Motif Atlas

Homologous match to IL_9H3G_223

Geometric discrepancy: 0.3561

The information below is about IL_9H3G_223

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9UZL|1|2|U|1343
9UZL|1|2|G|1344
9UZL|1|2|G|1345
*
9UZL|1|2|C|1376
9UZL|1|2|G|1377
9UZL|1|2|A|1378

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5

Chain F

Small ribosomal subunit protein uS3