IL_9UZL_081

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9UZL|1|2|C|1548, 9UZL|1|2|A|1575, 9UZL|1|2|C|1576

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|G|1545
9UZL|1|2|U|1546
9UZL|1|2|G|1547
9UZL|1|2|C|1548
9UZL|1|2|C|1549
9UZL|1|2|U|1550
9UZL|1|2|A|1551
9UZL|1|2|C|1552
9UZL|1|2|C|1553
*
9UZL|1|2|G|1572
9UZL|1|2|U|1573
9UZL|1|2|A|1574
9UZL|1|2|A|1575
9UZL|1|2|C|1576
9UZL|1|2|C|1577

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain M

Small ribosomal subunit protein eS10

Chain V

Small ribosomal subunit protein eS19

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14