IL_9UZL_092
3D structure
- PDB id
- 9UZL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.01 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9UZL_092 not in the Motif Atlas
- Homologous match to IL_9H3G_241
- Geometric discrepancy: 0.1167
- The information below is about IL_9H3G_241
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9UZL|1|2|U|1728
9UZL|1|2|G|1729
9UZL|1|2|A|1730
9UZL|1|2|G|1731
*
9UZL|1|2|C|1792
9UZL|1|2|G|1793
9UZL|1|2|A|1794
9UZL|1|2|A|1795
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- Small ribosomal subunit protein eS6
- Chain K
- Small ribosomal subunit protein eS8
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