IL_9UZL_098

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GCGGAACCCCCC*GCCUC

Length

17 nucleotides

Bulged bases

9UZL|1|z|C|536, 9UZL|1|z|C|537

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|z|G|530
9UZL|1|z|C|531
9UZL|1|z|G|532
9UZL|1|z|G|533
9UZL|1|z|A|534
9UZL|1|z|A|535
9UZL|1|z|C|536
9UZL|1|z|C|537
9UZL|1|z|C|538
9UZL|1|z|C|539
9UZL|1|z|C|540
9UZL|1|z|C|541
*
9UZL|1|z|G|556
9UZL|1|z|C|557
9UZL|1|z|C|558
9UZL|1|z|U|559
9UZL|1|z|C|560

Current chains

Chain z

Encephalomyocarditis viral IRES

Nearby chains

Chain U

Small ribosomal subunit protein uS13

Chain y

Transfer RNA; tRNA