IL_9UZM_028

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAG*CCUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZM_028 not in the Motif Atlas

Geometric match to IL_9UJU_004

Geometric discrepancy: 0.3057

The information below is about IL_9UJU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9UZM|1|2|C|522
9UZM|1|2|A|523
9UZM|1|2|G|524
*
9UZM|1|2|C|539
9UZM|1|2|C|540
9UZM|1|2|U|541
9UZM|1|2|G|542

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain i

Small ribosomal subunit protein eS30