RNA 3D Hub //

9UZM Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9UZM_0011/2/7:17No text annotation
homologous
HL_9PN5_077
HL_73535.4
HL_9UZM_0091/2/431:442No text annotation
homologous
HL_9PN5_086
HL_86432.4
HL_9UZM_0101/2/452:457No text annotation
homologous
HL_9PN5_087
HL_61337.7
HL_9UZM_0131/2/559:571No text annotation
homologous
HL_9PN5_090
HL_68749.4
HL_9UZM_0151/2/816:824No text annotation
homologous
HL_9PN5_092
HL_11974.5
HL_9UZM_0181/2/953:962No text annotation
homologous
HL_9H3G_093
HL_38491.5
HL_9UZM_0201/2/1050:1060No text annotation
homologous
HL_9H3G_095
HL_38491.5
HL_9UZM_0231/2/1174:1179No text annotation
homologous
HL_9H3G_098
HL_34789.7
HL_9UZM_0261/2/1349:1354No text annotation
homologous
HL_9H3G_101
HL_34789.7
HL_9UZM_0271/2/1362:1369No text annotation
homologous
HL_9H3G_102
HL_63894.5
HL_9UZM_0291/2/1456:1462No text annotation
geometric
HL_8GLP_113
HL_76371.5
HL_9UZM_0311/2/1609:1620No text annotation
homologous
HL_9PN5_108
HL_50951.4

Problematic loops

#loop idProblemSequence
HL_9UZM_002No text annotation
HL_9UZM_003No text annotation
HL_9UZM_004No text annotation
HL_9UZM_005No text annotation
HL_9UZM_006No text annotation
HL_9UZM_007No text annotation
HL_9UZM_008No text annotation
HL_9UZM_011No text annotation
HL_9UZM_012No text annotation
HL_9UZM_014No text annotation
HL_9UZM_016No text annotation
HL_9UZM_017No text annotation
HL_9UZM_019No text annotation
HL_9UZM_021No text annotation
HL_9UZM_022No text annotation
HL_9UZM_024No text annotation
HL_9UZM_025No text annotation
HL_9UZM_028No text annotation
HL_9UZM_030No text annotation
HL_9UZM_032No text annotation
HL_9UZM_033No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9UZM_0021/2/34:36,
1/2/509:511		Isolated non-canonical cWW pair
homologous
IL_9PN5_143
IL_01003.7
IL_9UZM_0031/2/37:40,
1/2/504:508		Double sheared
geometric
IL_8GLP_190
IL_58355.5
IL_9UZM_0041/2/41:47,
1/2/469:471		No text annotation
homologous
IL_9PN5_145
IL_88082.5
IL_9UZM_0081/2/108:115,
1/2/338:343		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.3
IL_9UZM_0091/2/116:121,
1/2/333:337		No text annotation
homologous
IL_9H3G_164
IL_31545.4
IL_9UZM_0181/2/349:354,
1/2/386:393		Kink-turn with non-sequential stacking
homologous
IL_9PN5_159
IL_46174.7
IL_9UZM_0191/2/356:361,
1/2/383:384		No text annotation
IL_9UZM_0201/2/401:403,
1/2/414:419		No text annotation
homologous
IL_9PN5_161
IL_93336.4
IL_9UZM_0231/2/477:479,
1/2/501:502		Single bulged U
homologous
IL_9PN5_164
IL_97561.8
IL_9UZM_0241/2/481:485,
1/2/498:499		No text annotation
homologous
IL_9PN5_165
IL_26900.4
IL_9UZM_0321/2/589:596,
1/2/626:627		No text annotation
homologous
IL_9PN5_171
IL_11411.4
IL_9UZM_0341/2/601:607,
1/2/614:622		Kink-turn related
homologous
IL_9PN5_173
IL_52042.4
IL_9UZM_0361/2/663:665,
1/2/1026:1028		Isolated non-canonical cWW pair
homologous
IL_9PN5_175
IL_01003.7
IL_9UZM_0381/2/797:799,
1/2/856:860		No text annotation
geometric
IL_9NLN_006
IL_24466.1
IL_9UZM_0401/2/803:811,
1/2/845:852		No text annotation
homologous
IL_9H3G_194
IL_59049.5
IL_9UZM_0411/2/869:870,
1/2/907:910		No text annotation
IL_9UZM_0441/2/918:919,
1/2/1015:1018		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_74641.5
IL_9UZM_0511/2/1043:1047,
1/2/1063:1067		No text annotation
homologous
IL_9H3G_204
IL_05821.4
IL_9UZM_0521/2/1087:1089,
1/2/1148:1154		No text annotation
homologous
IL_9H3G_205
IL_82706.5
IL_9UZM_0561/2/1164:1171,
1/2/1182:1187		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_9PN5_194
IL_84044.4
IL_9UZM_0571/2/1198:1200,
1/2/1689:1692		Isolated non-canonical cWW pair
geometric
IL_4WF9_018
IL_81485.1
IL_9UZM_0631/2/1277:1283,
1/2/1310:1312		No text annotation
IL_9UZM_0641/2/1277:1286,
1/2/1305:1312		No text annotation
IL_9UZM_0711/2/1359:1361,
1/2/1370:1371		Minor groove platform
homologous
IL_9H3G_224
IL_37129.1
IL_9UZM_0771/2/1449:1452,
1/2/1466:1471		No text annotation
IL_9UZM_0791/2/1536:1545,
1/2/1577:1587		No text annotation
IL_9UZM_0831/2/1695:1697,
1/2/1827:1830		No text annotation
homologous
IL_9H3G_233
IL_18228.4
IL_9UZM_0841/2/1697:1700,
1/2/1823:1827		No text annotation
homologous
IL_9PN5_221
IL_25873.5
IL_9UZM_0861/2/1703:1706,
1/2/1816:1820		No text annotation
homologous
IL_9PN5_223
IL_37443.2
IL_9UZM_0921/2/1734:1736,
1/2/1787:1789		Isolated non-canonical cWW pair
geometric
IL_2O3V_001
IL_71625.6

Problematic loops

#loop idProblemSequence
IL_9UZM_001Isolated non-canonical cWW pair
IL_9UZM_005Minor groove platform
IL_9UZM_006No text annotation
IL_9UZM_007No text annotation
IL_9UZM_010No text annotation
IL_9UZM_011Isolated cWH basepair
IL_9UZM_012No text annotation
IL_9UZM_013Isolated non-canonical cWW pair
IL_9UZM_014No text annotation
IL_9UZM_015Single stack bend
IL_9UZM_016Single bulged A
IL_9UZM_017Isolated non-canonical cWW pair
IL_9UZM_021Isolated cWH basepair
IL_9UZM_022Isolated non-canonical cWW pair
IL_9UZM_025Single bulged G
IL_9UZM_026Isolated non-canonical cWW pair
IL_9UZM_027No text annotation
IL_9UZM_028No text annotation
IL_9UZM_029Isolated non-canonical cWW pair
IL_9UZM_030No text annotation
IL_9UZM_031Tandem non-canonical cWW pairs
IL_9UZM_033Single bulged U
IL_9UZM_035Isolated non-canonical cWW pair
IL_9UZM_037Decoding loop related
IL_9UZM_039Isolated non-canonical cWW pair
IL_9UZM_042Single stack bend
IL_9UZM_043No text annotation
IL_9UZM_045Isolated non-canonical cWW pair
IL_9UZM_046Tandem non-canonical cWW pairs
IL_9UZM_047Tandem non-canonical cWW pairs
IL_9UZM_048Tandem non-canonical cWW pairs
IL_9UZM_049Kink-turn
IL_9UZM_050No text annotation
IL_9UZM_053Tandem non-canonical cWW pairs
IL_9UZM_054Isolated non-canonical cWW pair
IL_9UZM_055Minor groove platform
IL_9UZM_058Single bulged G
IL_9UZM_059No text annotation
IL_9UZM_060Isolated non-canonical cWW pair
IL_9UZM_061Minor groove platform
IL_9UZM_062No text annotation
IL_9UZM_065No text annotation
IL_9UZM_066No text annotation
IL_9UZM_067Single bulged U
IL_9UZM_068No text annotation
IL_9UZM_069Single bulged A
IL_9UZM_070Isolated cWH basepair
IL_9UZM_072No text annotation
IL_9UZM_073No text annotation
IL_9UZM_074No text annotation
IL_9UZM_075No text annotation
IL_9UZM_076No text annotation
IL_9UZM_078Isolated non-canonical cWW pair
IL_9UZM_080No text annotation
IL_9UZM_081No text annotation
IL_9UZM_082No text annotation
IL_9UZM_085Isolated non-canonical cWW pair
IL_9UZM_087Isolated non-canonical cWW pair
IL_9UZM_088Double sheared
IL_9UZM_089No text annotation
IL_9UZM_090No text annotation
IL_9UZM_091Double sheared
IL_9UZM_093No text annotation
IL_9UZM_094No text annotation
IL_9UZM_095Single stack bend
IL_9UZM_096No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9UZM_0011/2/40:41,
1/2/471:477,
1/2/502:504		No text annotation
homologous
J3_9H3G_028
J3_58657.4
J3_9UZM_0031/2/666:674,
1/2/914:918,
1/2/1018:1025		No text annotation
J3_9UZM_0041/2/666:674,
1/2/914:919,
1/2/1015:1025		No text annotation
J3_9UZM_0051/2/812:815,
1/2/825:827,
1/2/839:844		No text annotation
homologous
J3_9H3G_032
J3_97642.5
J3_9UZM_0061/2/934:937,
1/2/981:989,
1/2/996:1000		No text annotation
homologous
J3_9PN5_033
NA
J3_9UZM_0071/2/1090:1092,
1/2/1132:1136,
1/2/1143:1147		No text annotation
homologous
J3_9H3G_034
NA
J3_9UZM_0101/2/1233:1240,
1/2/1251:1262,
1/2/1511:1515		No text annotation
homologous
J3_9PN5_037
J3_88451.4
J3_9UZM_0121/2/1336:1341,
1/2/1380:1385,
1/2/1477:1482		No text annotation
homologous
J3_9H3G_039
NA
J3_9UZM_0131/2/1346:1347,
1/2/1356:1359,
1/2/1371:1375		No text annotation
homologous
J3_9PN5_040
J3_76043.7
J3_9UZM_0141/2/1387:1391,
1/2/1446:1449,
1/2/1471:1475		No text annotation
J3_9UZM_0151/2/1387:1391,
1/2/1446:1452,
1/2/1466:1475		No text annotation
J4_9UZM_0011/2/98:106,
1/2/345:347,
1/2/395:399,
1/2/421:422		No text annotation
homologous
J4_9PN5_010
J4_15241.5
J4_9UZM_0021/2/655:663,
1/2/1028:1033,
1/2/1074:1085,
1/2/1156:1158		No text annotation
J5_9UZM_0011/2/30:34,
1/2/511:517,
1/2/548:553,
1/2/582:585,
1/2/631:634		No text annotation
homologous
J5_9PN5_007
J5_04786.3
J5_9UZM_0021/2/30:34,
1/2/511:517,
1/2/548:555,
1/2/575:585,
1/2/631:634		No text annotation
J5_9UZM_0031/2/53:56,
1/2/89:96,
1/2/424:426,
1/2/447:449,
1/2/460:464		No text annotation
homologous
J5_9PN5_009
J5_58574.4

Problematic loops

#loop idProblemSequence
J3_9UZM_002No text annotation
J3_9UZM_008No text annotation
J3_9UZM_009No text annotation
J3_9UZM_011No text annotation
J3_9UZM_016No text annotation
J5_9UZM_004No text annotation

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