IL_9UZM_042

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZM_042 not in the Motif Atlas

Geometric match to IL_9E6Q_082

Geometric discrepancy: 0.2376

The information below is about IL_9E6Q_082

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9UZM|1|2|G|870
9UZM|1|2|A|871
9UZM|1|2|C|872
*
9UZM|1|2|G|906
9UZM|1|2|C|907

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein eS7

Chain N

Small ribosomal subunit protein uS17