IL_9UZM_068

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

9UZM|1|2|C|1327, 9UZM|1|2|U|1490, 9UZM|1|2|G|1493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZM|1|2|U|1325
9UZM|1|2|G|1326
9UZM|1|2|C|1327
9UZM|1|2|A|1328
9UZM|1|2|U|1329
9UZM|1|2|G|1330
9UZM|1|2|G|1331
*
9UZM|1|2|U|1488
9UZM|1|2|C|1489
9UZM|1|2|U|1490
9UZM|1|2|G|1491
9UZM|1|2|U|1492
9UZM|1|2|G|1493
9UZM|1|2|A|1494
9UZM|1|2|U|1495
9UZM|1|2|G|1496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain M

Small ribosomal subunit protein eS10

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein