IL_9V4U_001

3D structure

PDB id

9V4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Guanine-II riboswitch in complex with 7,8-dihydroneopterin

Experimental method

X-RAY DIFFRACTION

Resolution

2.54 Å

Loop

Sequence

UAAG*CGUAUCUA

Length

12 nucleotides

Bulged bases

9V4U|1|A|A|11, 9V4U|1|A|A|35, 9V4U|1|A|U|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38906.1

Basepair signature

cWW-tSW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9V4U|1|A|U|9
9V4U|1|A|A|10
9V4U|1|A|A|11
9V4U|1|A|G|12
*
9V4U|1|A|C|32
9V4U|1|A|G|33
9V4U|1|A|U|34
9V4U|1|A|A|35
9V4U|1|A|U|36
9V4U|1|A|C|37
9V4U|1|A|U|38
9V4U|1|A|A|39

Current chains

Chain A

RNA (71-MER)

Nearby chains