IL_9VMZ_007

3D structure

PDB id

9VMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Broccoli aptamer in with BI

Experimental method

X-RAY DIFFRACTION

Resolution

2.44 Å

Loop

Sequence

CGGGU*AGUAGAGUGUG

Length

16 nucleotides

Bulged bases

9VMZ|1|A|A|37||||2_556, 9VMZ|1|A|A|39||||2_556, 9VMZ|1|A|U|41||||2_556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VMZ_007 not in the Motif Atlas

Geometric match to IL_8K7W_003

Geometric discrepancy: 0.0508

The information below is about IL_8K7W_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47132.1

Basepair signature

cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

Number of instances in this motif group

6

Unit IDs

9VMZ|1|A|C|9||||2_556
9VMZ|1|A|G|10||||2_556
9VMZ|1|A|G|11||||2_556
9VMZ|1|A|G|12||||2_556
9VMZ|1|A|U|13||||2_556
*
9VMZ|1|A|A|34||||2_556
9VMZ|1|A|G|35||||2_556
9VMZ|1|A|U|36||||2_556
9VMZ|1|A|A|37||||2_556
9VMZ|1|A|G|38||||2_556
9VMZ|1|A|A|39||||2_556
9VMZ|1|A|G|40||||2_556
9VMZ|1|A|U|41||||2_556
9VMZ|1|A|G|42||||2_556
9VMZ|1|A|U|43||||2_556
9VMZ|1|A|G|44||||2_556

Current chains

Chain A

RNA (49-MER)

Nearby chains